Input | Tool | Description |
Transcript GFF | sort | Collapsed transcript GFF from isoseq collapse |
Reference Annotation | index | Reference annotation in GTF format |
Reference Genome | classify | Reference genome in FASTA format |
FL Counts (Optional) | classify | FL count info from isoseq collapse (*.abundance.txt ) |
CAGE Peaks (Optional) | classify | CAGE peaks in BED format |
polyA motif list (Optional) | classify | polyA motif list in custom format |
Intropolis data (Optional) | classify | Intropolis data in custom format |
Molecules FASTA | make-seurat | Molecules FASTA file from isoseq dedup |
Groups txt file | make-seurat | Groups text file from isoseq collapse |