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Pigeon Input

Input Tool Description
Transcript GFF sort Collapsed transcript GFF from isoseq collapse
Reference Annotation index Reference annotation in GTF format
Reference Genome classify Reference genome in FASTA format
FL Counts (Optional) classify FL count info from isoseq collapse (*.abundance.txt)
CAGE Peaks (Optional) classify CAGE peaks in BED format
polyA motif list (Optional) classify polyA motif list in custom format
Intropolis data (Optional) classify Intropolis data in custom format
Molecules FASTA make-seurat Molecules FASTA file from isoseq dedup
Groups txt file make-seurat Groups text file from isoseq collapse

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